I tried to install pharokka on Ubuntu 22.04. I first tried with conda, as suggested, then mamba, again as suggested. But the installation did not go through. I tried to install from source but I need to install the dependencies indicated. The first dependency was bcbio-gff, but during the installation from conda (conda install bcbio-gff) I got the error:
$ conda install bcbio-gffChannels: - conda-forge - bioconda - defaultsPlatform: linux-64Collecting package metadata (repodata.json): doneSolving environment: / warning libmamba Added empty dependency for problem type SOLVER_RULE_UPDATEfailedLibMambaUnsatisfiableError: Encountered problems while solving: - package bcbio-gff-0.6.2-py_0 requires bx-python, but none of the providers can be installedCould not solve for environment specsThe following packages are incompatible├─ bcbio-gff is installable and it requires│└─ bx-python with the potential options│├─ bx-python [0.10.0|0.8.13|0.9.0] would require││└─ python >=3.10,<3.11.0a0 , which can be installed;...└─ pin-1 is not installable because it requires└─ python 3.11.* , which conflicts with any installable versions previously reported.Pins seem to be involved in the conflict. Currently pinned specs: - python 3.11.* (labeled as 'pin-1')I got the same error with conda install bx-python so I installed python 3.12 (conda install python=3.12) since I though it was more advanced than 3.11, but now I get the error:
...└─ pin-1 is not installable because it requires└─ python 3.12.* , which conflicts with any installable versions previously reported.Pins seem to be involved in the conflict. Currently pinned specs: - python 3.12.* (labeled as 'pin-1')Thus, I thin the error was not in the version of python but on something upstream.
How can I install these packages properly? How can I solve this pin-1 problem? What is pin-1 in the first place?
Thank you