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Inconsistent disk usage/free space available depending of tools used

Problem

After reading many posts/forum threads I still don't understand if my hard drive has some space left or not...

I started looking into it because I installed Syncthing today and a notification error says that my disk is almost full and syncthing can't run, but I thought that I had about 40 Go left...

What I did to try to understand it and solve it

  • ran Disk analyzer (on root of system) : says 441,3 Go occupied / 45,4 Go available on total of 470,9 Go on a 480 GB disk
  • ran Disk analyser as sudo (on root of system) : says 443,6 Go occupied / 45,4 Go available on total of 470,9 Go on a 480 GB disk

Note : I don't understand why only the "occupied "size is different... And I suppose that the 10 Go difference between 470 and 480 is due to reserved memory for the system or something like that (?).

  • ran df

which outputs /dev/sda5 459849800 433180284 3236916 100% / so says its full...

  • ran sudo du -h --max-depth=1 /

which outputs :

48G /var0   /sys4,0K    /srv4,0K    /mnt72M /root63G /snap4,0K    /cdrom1,9G    /opt22M /etcdu: impossible de lire le répertoire '/proc/3353/task/3353/net': Argument invalidedu: impossible de lire le répertoire '/proc/3353/net': Argument invalidedu: impossible de lire le répertoire '/proc/6203/task/6203/net': Argument invalidedu: impossible de lire le répertoire '/proc/6203/net': Argument invalidedu: impossible d'accéder à'/proc/80737/task/80737/fd/3': Aucun fichier ou dossier de ce nomdu: impossible d'accéder à'/proc/80737/task/80737/fdinfo/3': Aucun fichier ou dossier de ce nomdu: impossible d'accéder à'/proc/80737/fd/4': Aucun fichier ou dossier de ce nomdu: impossible d'accéder à'/proc/80737/fdinfo/4': Aucun fichier ou dossier de ce nom0   /proc325G    /home16K /lost+found0   /dev368K    /tmp272M    /boot21G /usr8,0K    /mediadu: impossible d'accéder à'/run/user/1000/gvfs': Permission non accordéedu: impossible d'accéder à'/run/user/1000/doc': Permission non accordée4,0M    /run460G    /

so says there are about 10G free on the 470 Go total.

  • installed ncdu which like du says that disk usage is 459,2 GiB

  • ran lsof -nP +L1

which outputs 1413 lines of "deleted" files (vast majority are "memfd:mozilla-ipc"...) of various size. But I didn't find how to sum all those files to check the total disk usage.

  • ran find /proc/[0-9]*/fd -lname '*(deleted)' 2>/dev/null | perl -lne '($l = readlink) =~ s/ (deleted)$//; print -s, " $_ $l"' | sort -g (command found on another askubuntu thread) to sort the result by file size

which outputs 1516 lines, and here are the top ten lines - I suppose first number is size in bytes (?) :

2482816 /proc/2758/fd/378 /memfd:gdk-wayland (deleted)5439888 /proc/2758/fd/322 /memfd:gdk-wayland (deleted)6031750 /proc/22782/fd/28 /tmp/.org.chromium.Chromium.7Uj5wU (deleted)6987776 /proc/5122/fd/30 /memfd:mozilla-ipc (deleted)8087040 /proc/2758/fd/351 /memfd:gdk-wayland (deleted)8294400 /proc/2758/fd/224 /memfd:gdk-wayland (deleted)8783424 /proc/2758/fd/327 /memfd:gdk-wayland (deleted)8783424 /proc/2758/fd/360 /memfd:gdk-wayland (deleted)9216000 /proc/2758/fd/331 /memfd:gdk-wayland (deleted)67108864 /proc/2671/fd/6 /memfd:pulseaudio (deleted)

Questions

  • I am in the state where I don't know if my disk is really full or not... there are a lot on inconsistencies in the numbers (I'm not saying the numbers are wrong, I suppose that they do not always mean the same thing, but this is non-intelligible to me). So if anyone can help me understand that point, I'll be grateful !
  • I do not know if it's full because of "deleted" files that eat space or not. Any help on how to measure the disk usage of deleted files would also be appreciated
  • FinalIy I don't understand why I see 63G /snap with du while the Disk analyzer says its only 188,4 ko. I understand that there are symlinks to snaps in this folder and it looks like those symlinks (to /var/lib/snapd/snaps/) account for 24 G says du. Are those 24 G also in the 63 G of /snap ? I checked the du output of /snap and it doesn't look like so... But adding 63 G to the Disk analyzer output results in a total above the real disk size... This totally lost me...

Please tell me if you need more information, I'll be glad to give it to you :)


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